Related to Problem Set 1:
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Riggs, A. D., Bourgeois, S. and Cohn, M. "The Lac repressor-operator interaction: 3. Kinetic studies",
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Berg, O. G., Winter, R. B. and von Hippel, P. H. "Diffusion-driven mechanisms of protein translocation on nucleic acids: 1. Models and theory",
Biochemistry
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Mirny, L.
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J. Phys. A: Math. Theor.
42, 434013 (2009).
pdf
Wang, Y. M., Austin, R. H. and Cox, E. C. "Single molecule measurements of repressor protein 1d diffusion on DNA",
Phys. Rev. Lett.
97, 048302 (2006).
pdf
Hammar, P.
et al., "The lac repressor displays facilitated diffusion in living cells",
Science
336, 1595 (2012).
pdf
Related to Problem Set 2:
Acevedo-Morantes, C. Y. and Holger, W. "The Structure of Human Prions: From Biology to Structural Models: Considerations and Pitfalls"
Viruses
6, 3875 (2014).
pdf
Cobb, N. J.
et al. "Molecular architecture of human prion protein amyloid: a parallel, in-register beta-structure"
Proc. Natl. Acad. Sci. USA
104, 18946 (2007).
pdf
Diaz-Espinoza, R. and Soto, C. "High-resolution structure of infectious prion protein: the final frontier"
Nat. Struct. Mol. Biol.
19 370 (2012).
pdf
Bolton, D. C., McKinley, M. P. and Prusiner, S. B. "Identification of a protein that purifies with the scrapie prion"
Science
218, 1309 (1982).
pdf
Knowles, T. P.
et al. "An analytical solution to the kinetics of breakable filament assembly"
Science
326, 1533 (2009).
pdf