Hinczewski Lab

Theoretical Biophysics Research Group


65.  S. Iram, E. Dolson, J. Chiel, J. Pelesko, N. Krishnan, Ö. Güngör, B. Kuznets-Speck, S. Deffner, E. Ilker, J.G. Scott, M. Hinczewski, "Controlling the speed and trajectory of evolution with counterdiabatic driving"
Nature Physics in press (2020). bioRxiv:867143, DOI.

64.  E. Dolson, S. Iram, J. Chiel, J. Pelesko, N. Krishnan, Ö. Güngör, B. Kuznets-Speck, S. Deffner, E. Ilker, J.G. Scott, M. Hinczewski, "An introduction to using counterdiabatic driving to eliminate genetic lag in changing environments"
Artificial Life Conference Proceedings, 25 (2020). PDF.

63.  N. Maccaferri, T. Isoniemi, M. Hinczewski, M. Iarossi, G. Strangi, and F. De Angelis, "Designer Bloch plasmon polariton dispersion in grating-coupled hyperbolic metamaterials"
APL Photonics 5, 076109 (2020). PDF.

62.  M. ElKabbash, S.K. Valiyaveedu, A. Fraiwan, J. Cole, Y. Alapan, T. Letsou, N.D. Hoffman, C. Guo, R.M. Sankaran, U.A. Gurkan, M. Hinczewski, G. Strangi, "Ultrathin-film optical coating for angle independent remote hydrogen sensing"
Meas. Sci. Technol., in press (2020). PDF.

61.  S. Chatterjee, E. Shkondin, O. Takayama, A.V. Lavrinenko, M. Hinczewski, G. Strangi, "Generalized Brewster effect in aluminum-doped ZnO nanopillars"
Proc. SPIE 11345, Nanophotonics VIII, 1134524 (2020). PDF, DOI.

60.  D. Hathcock, R. Tehver, M. Hinczewski, D. Thirumalai, "Myosin V executes steps of variable length via structurally constrained diffusion"
eLife 9, e51569 (2020). PDF, DOI.

59.  M.L Mugnai, C. Hyeon, M. Hinczewski, D. Thirumalai, "Theoretical Perspectives on Biological Machines"
Rev. Mod. Phys. 92, 025001 (2020). PDF, DOI, arXiv:1908.11323.

58.  E. Ilker, M. Hinczewski, "Modeling the growth of organisms validates a general relation between metabolic costs and natural selection"
Phys. Rev. Lett. 122, 238101 (2019). PDF, arXiv:1806.11184.

57.  M. ElKabbash, K.V. Sreekanth, Y. Alapan, M. Kim, J. Cole, A. Fraiwan, T. Letsou, Y. Li, C. Guo, R.M. Sankaran, U.A. Gurkan, M. Hinczewski, G. Strangi, "Hydrogen Sensing Using Thin-Film Perfect Light Absorber"
ACS Photonics 6, 1889 (2019). PDF.

56.  K.V. Sreekanth, M. ElKabbash, R. Medwal, J. Zhang, T. Letsou, G. Strangi, M. Hinczewski, R.S. Rawat, C. Guo, R. Singh, "Generalized Brewster-angle effect in thin-film optical absorbers and its application for graphene hydrogen sensing"
ACS Photonics 6, 1610 (2019). PDF.

55.  R.C. Rockne et al., "The 2019 Mathematical Oncology Roadmap"
Phys. Biol. 16, 041005 (2019). PDF.

54.  K.V. Sreekanth, Q. Ouyang, S. Sreejith, S. Zeng, W. Lishu, E. Ilker, W. Dong, M. ElKabbash, Y. Ting, C.T. Lim, M. Hinczewski, G. Strangi, K.-T. Yong, R.E. Simpson, R. Singh, "Phase-Change-Material-Based Low-Loss Visible-Frequency Hyperbolic Metamaterials for Ultrasensitive Label-Free Biosensing"
Adv. Opt. Mater. 1900081 (2019). PDF.

53.  T. Letsou, M. ElKabbash, S. Iram, M. Hinczewski, G. Strangi, "Heat-induced perfect light absorption in thin-film metasurfaces for structural coloring" (Invited)
Opt. Mater. Express 9 1386 (2019). PDF, DOI.
Research highlight: Optical Society

52.  S. Adhikari, J. Moran, C. Weddle, M. Hinczewski, "Unraveling the mechanism of the cadherin-catenin-actin catch bond"
PLoS Comput. Biol. 14, e1006399 (2018). PDF, DOI.

51.  A.W. Eckford, B. Kuznets-Speck, M. Hinczewski, P.J. Thomas, "Thermodynamic Properties of Molecular Communication"
2018 IEEE International Symposium on Information Theory (ISIT), 2545 (2018). PDF, DOI.

50.  M. ElKabbash, S. Iram, T. Letsou, M. Hinczewski, G. Strangi, "Designer Perfect Light Absorption Using Ultrathin Lossless Dielectrics on Absorptive Substrates"
Adv. Opt. Mater. 6, 1800672 (2018). PDF, DOI.

49.  M. Kabbash, E. Ilker, T. Letsou, N. Hoffman, A. Yaney, M. Hinczewski, G. Strangi, "Iridescence Free and Narrow Band Perfect Light Absorption in Critically Coupled Metal-High Index Dielectric Cavities"
Opt. Lett. 42, 3598 (2017). PDF, DOI.
48.  H.S. Samanta, M. Hinczewski, and D. Thirumalai, "Optimal information transfer in enzymatic networks: A field theoretic formulation"
Phys. Rev. E 96, 012406 (2017). PDF, DOI.
47.  H.S. Samanta, P.I. Zhuravlev, M. Hinczewski, N. Hori, S. Chakrabarti, D. Thirumalai, "Protein Collapse is Encoded in the Folded State Architecture"
Soft Matter 13, 3622 (2017). arXiv:1608.06971.
46.  K.V. Sreekanth, M. ElKabbash, Y. Alapan, E. Ilker, M. Hinczewski, U.A. Gurkan, G. Strangi, "Hyperbolic metamaterials-based plasmonic biosensor for fluid biopsy with single molecule sensitivity"
EPJ Appl. Metamat. 4, 1 (2017). PDF, DOI.
45.  S. Chakrabarti, M. Hinczewski, D. Thirumalai, "Phenomenological and microscopic theories for catch bonds"
J. Struct. Biol. 197, 50 (2017). PDF, arXiv:1601.02050, DOI.
44.  D. Hathcock, J. Sheehy, C. Weisenberger, E. Ilker, M. Hinczewski, "Noise Filtering and Prediction in Biological Signaling Networks"
IEEE Trans. Mol. Biol. Multi-Scale Commun. 2, 16 (2016). PDF, arXiv:1610.00820, DOI.
43.  K.V. Sreekanth, Y. Alapan, M. ElKabbash, A.M. Wen, E. Ilker, M. Hinczewski, U.A. Gurkan, N.F. Steinmetz, G. Strangi, "Enhancing the angular sensitivity of plasmonic sensors using hyperbolic metamaterials"
Adv. Opt. Mater. 4, 1767 (2016). PDF, DOI.
42.  M. Hinczewski, C. Hyeon, D. Thirumalai, "Directly measuring single molecule heterogeneity using force spectroscopy"
Proc. Natl. Acad. Sci. 113, E3852 (2016). PDF, arXiv:1605.07294, DOI.
41.  H.T. Vu, S. Chakrabarti, M. Hinczewski, D. Thirumalai, "Discrete step sizes of molecular motors lead to bimodal non-Gaussian velocity distributions under force"
Phys. Rev. Lett. 117, 078101 (2016). PDF, arXiv:1604.00226, DOI.
40.  K.V. Sreekanth, Y. Alapan, M. ElKabbash, E. Ilker, M. Hinczewski, U.A. Gurkan, A. De Luca, G. Strangi, "Extreme sensitivity biosensing platform based on hyperbolic metamaterials"
Nature Materials 15, 621 (2016). PDF, DOI.
39.  M. Hinczewski and D. Thirumalai, "Noise control in gene regulatory networks with negative feedback"
J. Phys. Chem. B 120, 6166 (2016). PDF, arXiv:1603.02620, DOI.
38.  P.I. Zhuravlev, M. Hinczewski, S. Chakrabarti, S. Marqusee, D. Thirumalai, "Force-dependent switch in protein unfolding pathways and transition state movements"
Proc. Natl. Acad. Sci. 113, E715 (2016). PDF, arXiv:1512.08470.
37.  M. Hinczewski and D. Thirumalai, "Cellular signaling networks function as generalized Wiener-Kolmogorov filters to suppress noise"
Phys. Rev. X 4, 041017 (2014). PDF, DOI, arXiv:1406.3290.
36.  B. Ramm, J. Stigler, M. Hinczewski, D. Thirumalai, H. Herrmann, G. Woehlke, and M. Rief, "Sequence-resolved free energy profiles of stress-bearing vimentin intermediate filaments"
Proc. Natl. Acad. Sci. 111, 11359 (2014).  PDF, DOI.
35.  S. Chakrabarti, M. Hinczewski, and D. Thirumalai, "Plasticity of hydrogen bond networks regulates mechanochemistry of cell adhesion complexes"
Proc. Natl. Acad. Sci. 111, 9048 (2014).  PDF, DOI.
34. C. Hyeon, M. Hinczewski, and D. Thirumalai, "Evidence of disorder in biological molecules from single molecule pulling experiments"
Phys. Rev. Lett. 112, 138101 (2014).  PDF, DOI, arXiv:1402.6683.
33. M. Hinczewski, R. Tehver, and D. Thirumalai, "Design principles governing the motility of myosin V"
Proc. Natl. Acad. Sci. 110, E4059 (2013).  PDF, DOI, arXiv:1310.6741.
Research highlight: A. Klopper, "Walk the line", Nature Physics 9, 692 (2013).
32. M. Hinczewski, J.C.M. Gebhardt, M. Rief, and D. Thirumalai, "From mechanical folding trajectories to intrinsic energy landscapes of biopolymers"
Proc. Natl. Acad. Sci. 110, 4500 (2013).  PDF, DOI, arXiv:1303.6231.
31. O.S. Sariyer, M. Hinczewski, and A.N. Berker, "Phase separation and charge-ordered phases of the d=3 Falicov-Kimball model at nonzero temperature: Temperature-density-chemical potential global phase diagram from renormalization-group theory"
Phys. Rev. B 84, 205120 (2011).  PDF, DOI.
30. Y. von Hansen, F. Sedlmeier, M. Hinczewski, and R.R. Netz, "Friction contribution to water-bond breakage kinetics"
Phys. Rev. E 84, 051501 (2011).  PDF, DOI.
29. M. Hinczewski and R.R. Netz, "Anisotropic Hydrodynamic Mean-Field Theory for Semiflexible Polymer Dynamics under Tension"
Macromolecules 44, 6972 (2011).  PDF, DOI, arXiv:0908.0376.
28. Y. von Hansen, M. Hinczewski, and R.R. Netz, "Hydrodynamic screening near planar boundaries: Effects on semiflexible polymer dynamics"
J. Chem. Phys. 134, 235102 (2011).  PDF, DOI.
27. I. Sorar, D. Saygin-Hinczewski, M. Hinczewski, and F.Z. Tepehan, "Optical and structural properties of Si-doped ZnO thin films"
App. Surf. Sci. 257, 7343 (2011).  PDF, DOI.
26. G. Morrison, C. Hyeon, M. Hinczewski, and D. Thirumalai, "Compaction and tensile forces determine the accuracy of folding landscape parameters from single molecule pulling experiments"
Phys. Rev. Lett. 106, 138102 (2011).  PDF, DOI, arXiv:1103.0425.
25. M. Hinczewski, Y. von Hansen, and R.R. Netz, "Deconvolution of dynamic mechanical networks"
Proc. Natl. Acad. Sci. U.S.A. 107, 21493 (2010).  PDF, DOI, arXiv:1107.2611.
24. C. Güven, M. Hinczewski, A. Nihat Berker, "Tensor renormalization group: Local magnetizations, correlation functions, and phase diagrams of systems with quenched randomness"
Phys. Rev. E 82, 051110 (2010).  PDF, DOI, arXiv:1009.5517.
23. M. Hinczewski, Y. von Hansen, J. Dzubiella, and R.R. Netz, "How the diffusivity profile reduces the arbitrariness of protein folding free energies"
J. Chem. Phys. 132, 245103 (2010).  PDF, DOI, arXiv:1005.2200.
22. M. Hinczewski and R.R. Netz, "Dynamics of DNA: Experimental controversies and theoretical insights"
Physica A 389, 2993 (2010). Proceedings of the Nihat Berker 60th Birthday Symposium.  PDF, DOI.
21. C. Güven and M. Hinczewski, "The tensor renormalization group for pure and disordered two-dimensional lattice systems"
Physica A 389, 2915 (2010). Proceedings of the Nihat Berker 60th Birthday Symposium (2010).  PDF, DOI.
20. Y. von Hansen, R.R. Netz, and M. Hinczewski, "DNA-protein binding rates: Bending fluctuation and hydrodynamic coupling effects"
J. Chem. Phys. 132, 135103 (2010).  PDF, DOI, arXiv:0907.2573.
19. M. Hinczewski and R.R. Netz, "Global cross-over dynamics of single semiflexible polymers"
EPL 88, 18001 (2009).  PDF, DOI, arXiv:0907.3891.
18. A.N. Berker, M. Hinczewski, and R.R. Netz, "Critical percolation phase and thermal Berezinskii-Kosterlitz-Thouless transition in a scale-free network with short-range and long-range random bonds"
Phys. Rev. B 80, 041118 (2009).  PDF, DOI, arXiv:0907.0825.
17. C. Nadir Kaplan, M. Hinczewski, and A.N. Berker, "Infinitely robust order and local order-parameter tulips in Apollonian networks with quenched disorder"
Phys. Rev. E 79, 061120 (2009).  PDF, DOI, arXiv:0811.3437.
16. M. Hinczewski, X. Schlagberger, M. Rubinstein, O. Krichevsky, and R.R. Netz, "End-Monomer Dynamics in Semiflexible Polymers"
Macromolecules 42, 860 (2009).  PDF, DOI, arXiv:0809.0667.
15. C. Nadir Kaplan, A.N. Berker, and M. Hinczewski, "Frustrated further-neighbor antiferromagnetic and electron-hopping interactions in the d=3 t−J model: Finite-temperature global phase diagrams from renormalization group theory"
Phys. Rev. B 80, 214529 (2009).  PDF, DOI, arXiv:0809.5181.
14. M. Hinczewski and A.N. Berker, "Finite-temperature phase diagram of nonmagnetic impurities in high-temperature superconductors using a d=3 tJ model with quenched disorder"
Phys. Rev. B 78, 064507 (2008).  PDF, DOI, cond-mat/0607171.
13. C. Güven, A.N. Berker, M. Hinczewski, and H. Nishimori, "Reentrant and Forward Phase Diagrams of the Anisotropic Three-Dimensional Ising Spin Glass"
Phys. Rev. E 77, 061110 (2008).  PDF, DOI, arXiv:0802.0771.
12. M. Hinczewski and A.N. Berker, "High-Precision Thermodynamic and Critical Properties from Tensor Renormalization-Group Flows"
Phys. Rev. E 77, 011104 (2008).  PDF, DOI, arXiv:0709.2803.
11. D. Saygin-Hinczewski, M. Hinczewski, I. Sorar, F.Z. Tepehan, and G.G. Tepehan, "Modeling the Optical Properties of WO3 and WO3-SiO2 Thins Films"
Solar Energy Mater. Solar Cells 92, 821 (2008).  PDF, DOI.
10. O.S. Sariyer, A.N. Berker, and M. Hinczewski, "Excitation Spectrum Gap and Spin-Wave Stiffness of XXZ Heisenberg Chains: Global Renormalization-Group Calculation"
Phys. Rev. B 77, 134413 (2008).  PDF, DOI, arXiv:0704.1064.
9. M. Hinczewski, "Griffiths singularities and algebraic order in the exact solution of an Ising model on a fractal modular network"
Phys. Rev. E 75, 061104 (2007).  PDF, DOI, cond-mat/0701349.
8. D. Saygin-Hinczewski, K. Koc, I. Sorar, M. Hinczewski, F.Z. Tepehan, and G.G. Tepehan, "Optical and Structural Properties of Ta2O5-CeO2 Thin Films"
Solar Energy Mater. Solar Cells 91, 1726 (2007).  PDF, DOI.
7. M. Hinczewski and A.N. Berker, "d=3 Anisotropic and d=2 tJ Models: Phase Diagrams, Thermodynamic Properties, and Chemical Potential Shift"
Eur. Phys. J. B 51, 461 (2006).  PDF, DOI, cond-mat/0504741.
6. M. Hinczewski and A.N. Berker, "Inverted Berezinskii-Kosterlitz-Thouless Singularity and High-Temperature Algebraic Order in an Ising Model on a Scale-Free Hierarchical-Lattice Small-World Network"
Phys. Rev. E 73, 066126 (2006).  PDF, DOI, cond-mat/0512073.
5. M. Hinczewski and A.N. Berker, "Two Superconducting Phases in the d=3 Hubbard Model: Phase Diagram and Specific Heat from Renormalization-Group Calculations"
Eur. Phys. J. B 48, 1 (2005).  PDF, DOI, cond-mat/0503226.
4. M. Hinczewski and A.N. Berker, "Multicritical Point Relations in Three Dual Pairs of Hierarchical-Lattice Ising Spin-Glasses"
Phys. Rev. B 72, 144402, 1 (2005).  PDF, DOI, cond-mat/0507293.
3. D. Saygin Hinczewski, M. Hinczewski, F.Z. Tepehan, and G.G. Tepehan, "Optical Filters from SiO2 and TiO2 Multilayers Using Sol-Gel Spin Coating Method"
Solar Energy Mater. Solar Cells 87, 181 (2005).  PDF, DOI.
2. M.I. Bergman, L. Giersch, M. Hinczewski, and V. Izzo, "Elastic and attenuation anisotropy in directionally solidified (hcp) zinc, and the seismic anisotropy in the Earth's inner core"
Phys. Earth Planet. Int. 117, 139 (2000).  PDF, DOI.
1. M. Hinczewski and J.C.W. Rogers, "The response of a damped pendulum to a large driving force"
Eur. J. Appl. Math. 9, 105 (1998). DOI.